CVE-2026-116742
Full vulnerability record from the local CVENow database.
Description
HTSlib through 1.24 contains a heap out-of-bounds write and read vulnerability in bgzf_index_load_hfile() in bgzf.c that allows attackers to corrupt heap memory by supplying a crafted .gzi index entry count. A count of 0xFFFFFFFF truncates noffs to zero, causing writes past a malloc(0) buffer and an offs[-1] read in bgzf_useek(), resulting in heap corruption or crashes in tools like samtools and bcftools.
Severity
MEDIUM
CVSS score
4.8
(v4.0)
Vulnerability status
Received
Source identifier
Published
2026-10-26 22:16:58.680000
Last modified
2026-10-26 22:16:58.680000
View original CVE JSON
{
"id": "CVE-2026-116742",
"sourceIdentifier": "[email protected]",
"published": "2026-10-26T22:16:58.680",
"lastModified": "2026-10-26T22:16:58.680",
"vulnStatus": "Received",
"cveTags": [],
"descriptions": [
{
"lang": "en",
"value": "HTSlib through 1.24 contains a heap out-of-bounds write and read vulnerability in bgzf_index_load_hfile() in bgzf.c that allows attackers to corrupt heap memory by supplying a crafted .gzi index entry count. A count of 0xFFFFFFFF truncates noffs to zero, causing writes past a malloc(0) buffer and an offs[-1] read in bgzf_useek(), resulting in heap corruption or crashes in tools like samtools and bcftools."
}
],
"affected": [
{
"source": "[email protected]",
"affectedData": [
{
"vendor": "samtools",
"product": "htslib",
"defaultStatus": "unaffected",
"repo": "https://github.com/samtools/htslib",
"packageURL": "pkg:github/samtools/htslib",
"versions": [
{
"version": "0",
"lessThanOrEqual": "1.24",
"versionType": "custom",
"status": "affected"
}
]
}
]
}
],
"metrics": {
"cvssMetricV40": [
{
"source": "[email protected]",
"type": "Secondary",
"cvssData": {
"version": "4.0",
"vectorString": "CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N/E:X/CR:X/IR:X/AR:X/MAV:X/MAC:X/MAT:X/MPR:X/MUI:X/MVC:X/MVI:X/MVA:X/MSC:X/MSI:X/MSA:X/S:X/AU:X/R:X/V:X/RE:X/U:X",
"baseScore": 4.8,
"baseSeverity": "MEDIUM",
"attackVector": "LOCAL",
"attackComplexity": "LOW",
"attackRequirements": "NONE",
"privilegesRequired": "NONE",
"userInteraction": "PASSIVE",
"vulnConfidentialityImpact": "NONE",
"vulnIntegrityImpact": "LOW",
"vulnAvailabilityImpact": "LOW",
"subConfidentialityImpact": "NONE",
"subIntegrityImpact": "NONE",
"subAvailabilityImpact": "NONE",
"exploitMaturity": "NOT_DEFINED",
"confidentialityRequirement": "NOT_DEFINED",
"integrityRequirement": "NOT_DEFINED",
"availabilityRequirement": "NOT_DEFINED",
"modifiedAttackVector": "NOT_DEFINED",
"modifiedAttackComplexity": "NOT_DEFINED",
"modifiedAttackRequirements": "NOT_DEFINED",
"modifiedPrivilegesRequired": "NOT_DEFINED",
"modifiedUserInteraction": "NOT_DEFINED",
"modifiedVulnConfidentialityImpact": "NOT_DEFINED",
"modifiedVulnIntegrityImpact": "NOT_DEFINED",
"modifiedVulnAvailabilityImpact": "NOT_DEFINED",
"modifiedSubConfidentialityImpact": "NOT_DEFINED",
"modifiedSubIntegrityImpact": "NOT_DEFINED",
"modifiedSubAvailabilityImpact": "NOT_DEFINED",
"Safety": "NOT_DEFINED",
"Automatable": "NOT_DEFINED",
"Recovery": "NOT_DEFINED",
"valueDensity": "NOT_DEFINED",
"vulnerabilityResponseEffort": "NOT_DEFINED",
"providerUrgency": "NOT_DEFINED"
}
}
],
"cvssMetricV31": [
{
"source": "[email protected]",
"type": "Primary",
"cvssData": {
"version": "3.1",
"vectorString": "CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:N/I:L/A:L",
"baseScore": 4.4,
"baseSeverity": "MEDIUM",
"attackVector": "LOCAL",
"attackComplexity": "LOW",
"privilegesRequired": "NONE",
"userInteraction": "REQUIRED",
"scope": "UNCHANGED",
"confidentialityImpact": "NONE",
"integrityImpact": "LOW",
"availabilityImpact": "LOW"
},
"exploitabilityScore": 1.8,
"impactScore": 2.5
}
]
},
"weaknesses": [
{
"source": "[email protected]",
"type": "Primary",
"description": [
{
"lang": "en",
"value": "CWE-197"
}
]
}
],
"references": [
{
"url": "https://github.com/samtools/htslib",
"source": "[email protected]"
},
{
"url": "https://github.com/samtools/htslib/blob/1.24/bgzf.c#L2504",
"source": "[email protected]"
},
{
"url": "https://github.com/samtools/htslib/commit/18dddf02bb2c0053b32acec427723555a24b2873",
"source": "[email protected]"
},
{
"url": "https://github.com/samtools/htslib/issues/2113",
"source": "[email protected]"
},
{
"url": "https://github.com/samtools/htslib/pull/2057",
"source": "[email protected]"
},
{
"url": "https://hackmd.io/@haindpwn/htslib-bgzf-gzi-int-truncation-oob",
"source": "[email protected]"
},
{
"url": "https://www.vulncheck.com/advisories/htslib-through-1.24-heap-out-of-bounds-write-via-truncated-gzi-index-count",
"source": "[email protected]"
}
]
}